General Resources
 CRAN. The R mirror site at WashU.
 "Thank R It's Friday" Tutorial Basics.
 "Thank R It's Friday" Tutorial Graphing.
 "Thank R It's Friday" Tutorial Regression.
Authored Software
 hot.deck Performs multiple hotdeck imputation of categorical and continuous variables in a data frame (Skyler Cranmer, Jeff Gill, Natalie Jackson, Andreas Murr, Dave Armstrong).
 superdiag! for producing four comprehensive MCMC convergence diagnostics with one short R command (Tsunghan Tsai, Jeff Gill, and Jonathan Rapkin).
 A function for modern regression Summaries.
 Elicit: a Webbased tool for eliciting betadistributed priors from subjectmatter experts about nodes and edges of a network. Developed by John Freeman, Jeff Gill, Stephen R. Haptonstahl, Aaron Rapport.

R Code for Simulated Temporing.
NSF supported project.  R Code for Importance Sampling.
 C Language Source Code for Building Survey Subsets.
 R Code for GSRLS and SWLS Procedures.
 R Code for loglike functions (for simulations).
 R Code generating multivariate normals.
 Gauss Code for the GillMurray generalized Cholesky Decomposition.
 Gauss Code for the SchnabelEskow generalized Cholesky Decomposition, R version, and Some R routines for checking/running..
 R Code for colon cancer data analysis.
OS X
 Turning Your Mac Into a Scientific Workstation. Some links and steps for making your OS X machine a serious workstation for research. Jake Bowers and I have collected these resources with additions from Chris Zorn, Michael Herron, and Andrew Martin. Additional suggestions welcome.
TeX and LaTeX
I get a reasonable number of queries about using the TeX typesetting program. Basically MSWord is lame, and the idea of using WYSIWYG is incompatible with scientific communication. Conversely, the LaTeX program is ideally suited to the way we work. Actually I haven't seriously used a wordprocessor since about 1991. Some grad students are put off by the TeX world, which initially seems to be dominated by European academics with too much time on their hands and a weird fixation for animal drawings. The truth is that these are incredibly powerful tools for assembling perfectly typeset documents. The important thing is to get over the initial difference in using a typesetting program instead of a wordprocessor. Here are some links to get one started.
 The NotSo Short Introduction to LaTeX. A high quality free introduction for new users.
 The LaTeX Companion. Almost everyone eventually buys this. Do it early and get more benefits.
 CTAN. The Comprehensive TeX Archive Network.